Task 82000023

Name	corona_RdRp_v2_sidock_01703509_r1_s-20_2
Workunit	53324072
Created	9 Jun 2024, 8:54:24 UTC
Sent	13 Jun 2024, 16:19:28 UTC
Report deadline	19 Jun 2024, 16:19:28 UTC
Received	25 Jun 2024, 13:30:09 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	56209
Run time	1 days 1 hours 28 min 28 sec
CPU time	1 days 1 hours 27 min 26 sec
Validate state	Valid
Credit	2,382.47
Device peak FLOPS	7.16 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.34 MB
Peak swap size	219.87 MB
Peak disk usage	20.80 MB
Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:59:51 (137924): wrapper (7.17.26016): starting
12:59:51 (137924): wrapper (7.17.26016): starting
12:59:51 (137924): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55be6fe3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f744563e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f744568b94c]
/lib64/libc.so.6(raise+0x16)[0x7f744563e646]
/lib64/libc.so.6(abort+0xd3)[0x7f74456287f3]
/lib64/libc.so.6(+0x29130)[0x7f7445629130]
/lib64/libc.so.6(+0x959f7)[0x7f74456959f7]
/lib64/libc.so.6(+0x972ac)[0x7f74456972ac]
/lib64/libc.so.6(free+0x55)[0x7f7445699d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55be6fe5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55be6fe7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f744563e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f74456d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f74456d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f7445704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55be6fe51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55be6fe1e784]
/lib64/libc.so.6(+0x29590)[0x7f7445629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f7445629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55be6fe1aa3a]

Exiting...
06:01:24 (10772): wrapper (7.17.26016): starting
06:01:24 (10772): wrapper (7.17.26016): starting
06:01:24 (10772): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5633af43ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f4fe763e6f0]
/lib64/libc.so.6(free+0x1e)[0x7f4fe7699cfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5633af45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5633af47b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f4fe763e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f4fe76d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f4fe76d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f4fe7704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5633af451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5633af41e784]
/lib64/libc.so.6(+0x29590)[0x7f4fe7629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f4fe7629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5633af41aa3a]

Exiting...
06:00:52 (2507): wrapper (7.17.26016): starting
06:00:52 (2507): wrapper (7.17.26016): starting
06:00:52 (2507): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55709e03ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fd0b043e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fd0b048b94c]
/lib64/libc.so.6(raise+0x16)[0x7fd0b043e646]
/lib64/libc.so.6(abort+0xd3)[0x7fd0b04287f3]
/lib64/libc.so.6(+0x29130)[0x7fd0b0429130]
/lib64/libc.so.6(+0x959f7)[0x7fd0b04959f7]
/lib64/libc.so.6(+0x972ac)[0x7fd0b04972ac]
/lib64/libc.so.6(free+0x55)[0x7fd0b0499d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55709e05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55709e07b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fd0b043e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fd0b04d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fd0b04d8c87]
/lib64/libc.so.6(sleep+0x3e)[0x7fd0b04d8bbe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55709e051a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55709e01e784]
/lib64/libc.so.6(+0x29590)[0x7fd0b0429590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fd0b0429640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55709e01aa3a]

Exiting...
06:24:44 (2723): wrapper (7.17.26016): starting
06:24:44 (2723): wrapper (7.17.26016): starting
06:24:44 (2723): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5643ef63ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7efc4763e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7efc4768b94c]
/lib64/libc.so.6(raise+0x16)[0x7efc4763e646]
/lib64/libc.so.6(abort+0xd3)[0x7efc476287f3]
/lib64/libc.so.6(+0x29130)[0x7efc47629130]
/lib64/libc.so.6(+0x959f7)[0x7efc476959f7]
/lib64/libc.so.6(+0x972ac)[0x7efc476972ac]
/lib64/libc.so.6(free+0x55)[0x7efc47699d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5643ef65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5643ef67b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7efc4763e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7efc476d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7efc476d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7efc47704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5643ef651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5643ef61e784]
/lib64/libc.so.6(+0x29590)[0x7efc47629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7efc47629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5643ef61aa3a]

Exiting...
06:00:51 (2734): wrapper (7.17.26016): starting
06:00:51 (2734): wrapper (7.17.26016): starting
06:00:51 (2734): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557fbf43ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f139143e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f139148b94c]
/lib64/libc.so.6(raise+0x16)[0x7f139143e646]
/lib64/libc.so.6(abort+0xd3)[0x7f13914287f3]
/lib64/libc.so.6(+0x29130)[0x7f1391429130]
/lib64/libc.so.6(+0x959f7)[0x7f13914959f7]
/lib64/libc.so.6(+0x972ac)[0x7f13914972ac]
/lib64/libc.so.6(free+0x55)[0x7f1391499d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557fbf45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557fbf47b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f139143e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f13914d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f13914d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f1391504b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557fbf451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557fbf41e784]
/lib64/libc.so.6(+0x29590)[0x7f1391429590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f1391429640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557fbf41aa3a]

Exiting...
08:28:19 (2712): wrapper (7.17.26016): starting
08:28:19 (2712): wrapper (7.17.26016): starting
08:28:19 (2712): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5629a6e3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f8c3163e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f8c3168b94c]
/lib64/libc.so.6(raise+0x16)[0x7f8c3163e646]
/lib64/libc.so.6(abort+0xd3)[0x7f8c316287f3]
/lib64/libc.so.6(+0x29130)[0x7f8c31629130]
/lib64/libc.so.6(+0x959f7)[0x7f8c316959f7]
/lib64/libc.so.6(+0x972ac)[0x7f8c316972ac]
/lib64/libc.so.6(free+0x55)[0x7f8c31699d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5629a6e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5629a6e7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f8c3163e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f8c316d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f8c316d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f8c31704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5629a6e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5629a6e1e784]
/lib64/libc.so.6(+0x29590)[0x7f8c31629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f8c31629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5629a6e1aa3a]

Exiting...
06:15:42 (2725): wrapper (7.17.26016): starting
06:15:42 (2725): wrapper (7.17.26016): starting
06:15:42 (2725): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a94123ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f6b3963e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f6b3968b94c]
/lib64/libc.so.6(raise+0x16)[0x7f6b3963e646]
/lib64/libc.so.6(abort+0xd3)[0x7f6b396287f3]
/lib64/libc.so.6(+0x29130)[0x7f6b39629130]
/lib64/libc.so.6(+0x959f7)[0x7f6b396959f7]
/lib64/libc.so.6(+0x972ac)[0x7f6b396972ac]
/lib64/libc.so.6(free+0x55)[0x7f6b39699d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a94125c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a94127b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f6b3963e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f6b396d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f6b396d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f6b39704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a941251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a94121e784]
/lib64/libc.so.6(+0x29590)[0x7f6b39629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f6b39629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a94121aa3a]

Exiting...
06:34:41 (2728): wrapper (7.17.26016): starting
06:34:41 (2728): wrapper (7.17.26016): starting
06:34:41 (2728): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:29:56 (2728): cmdock exited; CPU time 8409.821995
09:29:56 (2728): called boinc_finish(0)

</stderr_txt>
]]>