Task 81991844

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
22:43:25 (26142): wrapper (7.17.26016): starting
22:43:25 (26142): wrapper (7.17.26016): starting
22:43:25 (26142): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55643123ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f78e01f6ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f78e025dd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55643125c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55643127b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f78e01f6ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f78e0298f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f78e02a4d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f78e02cfbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556431251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55643121e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f78e01dfc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f78e01dfd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55643121aa3a]

Exiting...
14:39:04 (8321): wrapper (7.17.26016): starting
14:39:04 (8321): wrapper (7.17.26016): starting
14:39:04 (8321): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55debf63ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fc9cd7f5ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fc9cd85cd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55debf65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55debf67b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fc9cd7f5ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fc9cd897f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fc9cd8a3d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fc9cd8cebda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55debf651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55debf61e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fc9cd7dec88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fc9cd7ded4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55debf61aa3a]

Exiting...
17:30:53 (6476): wrapper (7.17.26016): starting
17:30:53 (6476): wrapper (7.17.26016): starting
17:30:53 (6476): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:43:39 (9468): wrapper (7.17.26016): starting
21:43:39 (9468): wrapper (7.17.26016): starting
21:43:39 (9468): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55dc2383ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f4b406c4ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f4b4072bd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55dc2385c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55dc2387b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f4b406c4ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f4b40766f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f4b40772d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f4b4079dbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55dc23851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55dc2381e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f4b406adc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f4b406add4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55dc2381aa3a]

Exiting...
13:36:25 (7686): wrapper (7.17.26016): starting
13:36:25 (7686): wrapper (7.17.26016): starting
13:36:25 (7686): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:56:25 (8302): wrapper (7.17.26016): starting
21:56:25 (8302): wrapper (7.17.26016): starting
21:56:25 (8302): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56516aa3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f9b666c5ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f9b6672cd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56516aa5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56516aa7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f9b666c5ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f9b66767f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f9b66773d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f9b6679ebda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56516aa51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56516aa1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f9b666aec88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f9b666aed4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56516aa1aa3a]

Exiting...
23:10:36 (8241): wrapper (7.17.26016): starting
23:10:36 (8241): wrapper (7.17.26016): starting
23:10:36 (8241): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x561d4a23ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fe797d3dae0]
/usr/lib/libc.so.6(+0x94e44)[0x7fe797d95e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7fe797d3da30]
/usr/lib/libc.so.6(abort+0xdf)[0x7fe797d254c3]
/usr/lib/libc.so.6(+0x25354)[0x7fe797d26354]
/usr/lib/libc.so.6(+0x9f085)[0x7fe797da0085]
/usr/lib/libc.so.6(+0xa149c)[0x7fe797da249c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7fe797da4dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x561d4a25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x561d4a27b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fe797d3dae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fe797ddff43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fe797debd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fe797e16bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561d4a251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x561d4a21e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fe797d26c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fe797d26d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x561d4a21aa3a]

Exiting...
21:46:25 (7774): wrapper (7.17.26016): starting
21:46:26 (7774): wrapper (7.17.26016): starting
21:46:26 (7774): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:37:21 (7865): wrapper (7.17.26016): starting
22:37:21 (7865): wrapper (7.17.26016): starting
22:37:21 (7865): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e8bf63ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f5af7c40ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f5af7ca7d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e8bf65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e8bf67b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f5af7c40ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f5af7ce2f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f5af7ceed77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f5af7d19bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e8bf651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e8bf61e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f5af7c29c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f5af7c29d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e8bf61aa3a]

Exiting...
11:26:06 (7951): wrapper (7.17.26016): starting
11:26:06 (7951): wrapper (7.17.26016): starting
11:26:06 (7951): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5566ef83ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f23e15e2ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f23e1649d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5566ef85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5566ef87b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f23e15e2ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f23e1684f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f23e1690d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f23e16bbbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5566ef851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5566ef81e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f23e15cbc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f23e15cbd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5566ef81aa3a]

Exiting...
22:53:09 (6501): wrapper (7.17.26016): starting
22:53:09 (6501): wrapper (7.17.26016): starting
22:53:09 (6501): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:08:08 (66645): wrapper (7.17.26016): starting
23:08:08 (66645): wrapper (7.17.26016): starting
23:08:08 (66645): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56151483ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f8556e4eae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f8556ea6e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f8556e4ea30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f8556e364c3]
/usr/lib/libc.so.6(+0x25354)[0x7f8556e37354]
/usr/lib/libc.so.6(+0x9f085)[0x7f8556eb1085]
/usr/lib/libc.so.6(+0xa149c)[0x7f8556eb349c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f8556eb5dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56151485c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56151487b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f8556e4eae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f8556ef0f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f8556efcd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f8556f27bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561514851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56151481e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f8556e37c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f8556e37d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56151481aa3a]

Exiting...
12:26:42 (7911): wrapper (7.17.26016): starting
12:26:42 (7911): wrapper (7.17.26016): starting
12:26:42 (7911): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5587a3e3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f736a2ceae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f736a335d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5587a3e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5587a3e7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f736a2ceae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f736a370f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f736a37cd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f736a3a7bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5587a3e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5587a3e1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f736a2b7c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f736a2b7d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5587a3e1aa3a]

Exiting...
21:51:52 (6497): wrapper (7.17.26016): starting
21:51:52 (6497): wrapper (7.17.26016): starting
21:51:52 (6497): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x561143c3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fbddc19dae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fbddc204d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x561143c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x561143c7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fbddc19dae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fbddc23ff43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fbddc24bd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fbddc276bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561143c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x561143c1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fbddc186c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fbddc186d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x561143c1aa3a]

Exiting...
21:51:42 (8253): wrapper (7.17.26016): starting
21:51:42 (8253): wrapper (7.17.26016): starting
21:51:42 (8253): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:01:02 (47669): wrapper (7.17.26016): starting
00:01:03 (47669): wrapper (7.17.26016): starting
00:01:03 (47669): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560d2543ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f1dcb5deae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f1dcb636e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f1dcb5dea30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f1dcb5c64c3]
/usr/lib/libc.so.6(+0x25354)[0x7f1dcb5c7354]
/usr/lib/libc.so.6(+0x9f085)[0x7f1dcb641085]
/usr/lib/libc.so.6(+0xa149c)[0x7f1dcb64349c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f1dcb645dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560d2545c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560d2547b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f1dcb5deae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f1dcb680f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f1dcb68cd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f1dcb6b7bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560d25451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560d2541e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f1dcb5c7c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f1dcb5c7d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560d2541aa3a]

Exiting...
14:55:11 (8373): wrapper (7.17.26016): starting
14:55:11 (8373): wrapper (7.17.26016): starting
14:55:11 (8373): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560eaca3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f03ef081ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f03ef0e8d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560eaca5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560eaca7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f03ef081ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f03ef123f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f03ef12fd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f03ef15abda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560eaca51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560eaca1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f03ef06ac88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f03ef06ad4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560eaca1aa3a]

Exiting...
21:37:26 (8473): wrapper (7.17.26016): starting
21:37:26 (8473): wrapper (7.17.26016): starting
21:37:26 (8473): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5565fa03ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7efc8a1d7ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7efc8a23ed55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5565fa05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5565fa07b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7efc8a1d7ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7efc8a279f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7efc8a285d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7efc8a2b0bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5565fa051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5565fa01e784]
/usr/lib/libc.so.6(+0x25c88)[0x7efc8a1c0c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7efc8a1c0d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5565fa01aa3a]

Exiting...
22:05:16 (7805): wrapper (7.17.26016): starting
22:05:16 (7805): wrapper (7.17.26016): starting
22:05:16 (7805): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d8da43ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fab39de2ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fab39e49d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d8da45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d8da47b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fab39de2ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fab39e84f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fab39e90d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fab39ebbbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d8da451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d8da41e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fab39dcbc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fab39dcbd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d8da41aa3a]

Exiting...
16:09:12 (7684): wrapper (7.17.26016): starting
16:09:12 (7684): wrapper (7.17.26016): starting
16:09:12 (7684): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:18:03 (56172): wrapper (7.17.26016): starting
17:18:04 (56172): wrapper (7.17.26016): starting
17:18:04 (56172): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:31:28 (101412): wrapper (7.17.26016): starting
17:31:28 (101412): wrapper (7.17.26016): starting
17:31:28 (101412): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x555ee6a3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f576bfe6ae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f576c03ee44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f576bfe6a30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f576bfce4c3]
/usr/lib/libc.so.6(+0x25354)[0x7f576bfcf354]
/usr/lib/libc.so.6(+0x9f085)[0x7f576c049085]
/usr/lib/libc.so.6(+0xa149c)[0x7f576c04b49c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f576c04ddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x555ee6a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x555ee6a7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f576bfe6ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f576c088f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f576c094d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f576c0bfbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x555ee6a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x555ee6a1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f576bfcfc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f576bfcfd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x555ee6a1aa3a]

Exiting...
17:44:50 (7920): wrapper (7.17.26016): starting
17:44:50 (7920): wrapper (7.17.26016): starting
17:44:50 (7920): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:11:37 (6484): wrapper (7.17.26016): starting
17:11:37 (6484): wrapper (7.17.26016): starting
17:11:37 (6484): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:17:05 (6490): wrapper (7.17.26016): starting
21:17:05 (6490): wrapper (7.17.26016): starting
21:17:05 (6490): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:56:33 (28176): wrapper (7.17.26016): starting
21:56:33 (28176): wrapper (7.17.26016): starting
21:56:33 (28176): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:11:56 (8316): wrapper (7.17.26016): starting
08:11:57 (8316): wrapper (7.17.26016): starting
08:11:57 (8316): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56131c43ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fc3ac2faae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fc3ac361d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56131c45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56131c47b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fc3ac2faae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fc3ac39cf43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fc3ac3a8d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fc3ac3d3bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56131c451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56131c41e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fc3ac2e3c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fc3ac2e3d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56131c41aa3a]

Exiting...
21:22:47 (8335): wrapper (7.17.26016): starting
21:22:47 (8335): wrapper (7.17.26016): starting
21:22:47 (8335): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:14:51 (8335): cmdock exited; CPU time 3054.567279
22:14:51 (8335): called boinc_finish(0)

</stderr_txt>
]]>

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