Task 81991668

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
22:10:51 (25035): wrapper (7.17.26016): starting
22:10:52 (25035): wrapper (7.17.26016): starting
22:10:52 (25035): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558812c3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fa049b84ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fa049bebd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558812c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558812c7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fa049b84ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fa049c26f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fa049c32d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fa049c5dbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558812c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558812c1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fa049b6dc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fa049b6dd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558812c1aa3a]

Exiting...
14:39:04 (8316): wrapper (7.17.26016): starting
14:39:04 (8316): wrapper (7.17.26016): starting
14:39:04 (8316): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55678423ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fe0d71ffae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fe0d7266d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55678425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55678427b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fe0d71ffae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fe0d72a1f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fe0d72add77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fe0d72d8bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556784251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55678421e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fe0d71e8c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fe0d71e8d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55678421aa3a]

Exiting...
17:30:53 (6473): wrapper (7.17.26016): starting
17:30:53 (6473): wrapper (7.17.26016): starting
17:30:53 (6473): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:43:39 (9465): wrapper (7.17.26016): starting
21:43:39 (9465): wrapper (7.17.26016): starting
21:43:39 (9465): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b5bd63ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fbcf48c5ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fbcf492cd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b5bd65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b5bd67b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fbcf48c5ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fbcf4967f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fbcf4973d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fbcf499ebda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b5bd651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b5bd61e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fbcf48aec88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fbcf48aed4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b5bd61aa3a]

Exiting...
13:36:25 (7683): wrapper (7.17.26016): starting
13:36:25 (7683): wrapper (7.17.26016): starting
13:36:25 (7683): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:56:25 (8294): wrapper (7.17.26016): starting
21:56:25 (8294): wrapper (7.17.26016): starting
21:56:25 (8294): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x563217a3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f5e993cbae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f5e99432d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x563217a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x563217a7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f5e993cbae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f5e9946df43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f5e99479d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f5e994a4bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563217a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x563217a1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f5e993b4c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f5e993b4d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x563217a1aa3a]

Exiting...
23:10:36 (8238): wrapper (7.17.26016): starting
23:10:36 (8238): wrapper (7.17.26016): starting
23:10:36 (8238): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c5f9e3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f81389a3ae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f81389fbe44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f81389a3a30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f813898b4c3]
/usr/lib/libc.so.6(+0x25354)[0x7f813898c354]
/usr/lib/libc.so.6(+0x9f085)[0x7f8138a06085]
/usr/lib/libc.so.6(+0xa149c)[0x7f8138a0849c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f8138a0adae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c5f9e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c5f9e7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f81389a3ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f8138a45f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f8138a51d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f8138a7cbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55c5f9e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c5f9e1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f813898cc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f813898cd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c5f9e1aa3a]

Exiting...
21:46:25 (7771): wrapper (7.17.26016): starting
21:46:26 (7771): wrapper (7.17.26016): starting
21:46:26 (7771): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:37:21 (7851): wrapper (7.17.26016): starting
22:37:21 (7851): wrapper (7.17.26016): starting
22:37:21 (7851): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x562725a3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f90d6120ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f90d6187d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x562725a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x562725a7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f90d6120ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f90d61c2f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f90d61ced77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f90d61f9bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x562725a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x562725a1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f90d6109c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f90d6109d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x562725a1aa3a]

Exiting...
11:26:06 (7948): wrapper (7.17.26016): starting
11:26:06 (7948): wrapper (7.17.26016): starting
11:26:06 (7948): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a8fb03ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f3ccc05eae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f3ccc0c5d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a8fb05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a8fb07b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f3ccc05eae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f3ccc100f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f3ccc10cd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f3ccc137bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a8fb051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a8fb01e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f3ccc047c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f3ccc047d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a8fb01aa3a]

Exiting...
22:53:09 (6498): wrapper (7.17.26016): starting
22:53:09 (6498): wrapper (7.17.26016): starting
22:53:09 (6498): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:08:08 (66642): wrapper (7.17.26016): starting
23:08:08 (66642): wrapper (7.17.26016): starting
23:08:08 (66642): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ac2723ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f9e8d53fae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f9e8d597e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f9e8d53fa30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f9e8d5274c3]
/usr/lib/libc.so.6(+0x25354)[0x7f9e8d528354]
/usr/lib/libc.so.6(+0x9f085)[0x7f9e8d5a2085]
/usr/lib/libc.so.6(+0xa149c)[0x7f9e8d5a449c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f9e8d5a6dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ac2725c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ac2727b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f9e8d53fae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f9e8d5e1f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f9e8d5edd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f9e8d618bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ac27251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ac2721e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f9e8d528c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f9e8d528d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ac2721aa3a]

Exiting...
12:26:42 (7908): wrapper (7.17.26016): starting
12:26:42 (7908): wrapper (7.17.26016): starting
12:26:42 (7908): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x556e5303ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fa185594ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fa1855fbd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x556e5305c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x556e5307b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fa185594ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fa185636f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fa185642d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fa18566dbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556e53051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x556e5301e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fa18557dc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fa18557dd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x556e5301aa3a]

Exiting...
21:51:52 (6494): wrapper (7.17.26016): starting
21:51:52 (6494): wrapper (7.17.26016): starting
21:51:52 (6494): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55957b43ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fc36efeeae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fc36f055d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55957b45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55957b47b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fc36efeeae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fc36f090f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fc36f09cd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fc36f0c7bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55957b451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55957b41e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fc36efd7c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fc36efd7d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55957b41aa3a]

Exiting...
21:51:42 (8250): wrapper (7.17.26016): starting
21:51:42 (8250): wrapper (7.17.26016): starting
21:51:42 (8250): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:01:02 (47667): wrapper (7.17.26016): starting
00:01:03 (47667): wrapper (7.17.26016): starting
00:01:03 (47667): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55817503ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fe3a2060ae0]
/usr/lib/libc.so.6(+0x94e44)[0x7fe3a20b8e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7fe3a2060a30]
/usr/lib/libc.so.6(abort+0xdf)[0x7fe3a20484c3]
/usr/lib/libc.so.6(+0x25354)[0x7fe3a2049354]
/usr/lib/libc.so.6(+0x9f085)[0x7fe3a20c3085]
/usr/lib/libc.so.6(+0xa149c)[0x7fe3a20c549c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7fe3a20c7dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55817505c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55817507b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fe3a2060ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fe3a2102f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fe3a210ed77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fe3a2139bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558175051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55817501e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fe3a2049c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fe3a2049d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55817501aa3a]

Exiting...
14:55:11 (8371): wrapper (7.17.26016): starting
14:55:11 (8371): wrapper (7.17.26016): starting
14:55:11 (8371): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55dacbc3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f7b5cf46ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f7b5cfadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55dacbc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55dacbc7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f7b5cf46ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f7b5cfe8f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f7b5cff4d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f7b5d01fbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55dacbc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55dacbc1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f7b5cf2fc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f7b5cf2fd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55dacbc1aa3a]

Exiting...
21:37:26 (8469): wrapper (7.17.26016): starting
21:37:26 (8469): wrapper (7.17.26016): starting
21:37:26 (8469): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d05243ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f976fd23ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f976fd8ad55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d05245c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d05247b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f976fd23ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f976fdc5f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f976fdd1d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f976fdfcbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d052451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d05241e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f976fd0cc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f976fd0cd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d05241aa3a]

Exiting...
22:05:16 (7803): wrapper (7.17.26016): starting
22:05:16 (7803): wrapper (7.17.26016): starting
22:05:16 (7803): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5555ccc3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f10043e7ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f100444ed55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5555ccc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5555ccc7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f10043e7ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f1004489f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f1004495d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f10044c0bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5555ccc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5555ccc1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f10043d0c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f10043d0d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5555ccc1aa3a]

Exiting...
16:09:12 (7682): wrapper (7.17.26016): starting
16:09:12 (7682): wrapper (7.17.26016): starting
16:09:12 (7682): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:18:03 (56171): wrapper (7.17.26016): starting
17:18:04 (56171): wrapper (7.17.26016): starting
17:18:04 (56171): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:31:28 (101411): wrapper (7.17.26016): starting
17:31:28 (101411): wrapper (7.17.26016): starting
17:31:28 (101411): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
munmap_chunk(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56310f83ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7efd55099ae0]
/usr/lib/libc.so.6(+0x94e44)[0x7efd550f1e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7efd55099a30]
/usr/lib/libc.so.6(abort+0xdf)[0x7efd550814c3]
/usr/lib/libc.so.6(+0x25354)[0x7efd55082354]
/usr/lib/libc.so.6(+0x9f085)[0x7efd550fc085]
/usr/lib/libc.so.6(+0x9f31c)[0x7efd550fc31c]
/usr/lib/libc.so.6(__libc_free+0xca)[0x7efd55100dfa]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56310f85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56310f87b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7efd55099ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7efd5513bf43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7efd55147d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7efd55172bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56310f851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56310f81e784]
/usr/lib/libc.so.6(+0x25c88)[0x7efd55082c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7efd55082d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56310f81aa3a]

Exiting...
17:44:50 (7919): wrapper (7.17.26016): starting
17:44:50 (7919): wrapper (7.17.26016): starting
17:44:50 (7919): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:11:37 (6483): wrapper (7.17.26016): starting
17:11:37 (6483): wrapper (7.17.26016): starting
17:11:37 (6483): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:17:05 (6489): wrapper (7.17.26016): starting
21:17:05 (6489): wrapper (7.17.26016): starting
21:17:05 (6489): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:56:33 (28175): wrapper (7.17.26016): starting
21:56:33 (28175): wrapper (7.17.26016): starting
21:56:33 (28175): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:11:56 (8315): wrapper (7.17.26016): starting
08:11:57 (8315): wrapper (7.17.26016): starting
08:11:57 (8315): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5582d823ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f02626eeae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f0262755d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5582d825c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5582d827b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f02626eeae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f0262790f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f026279cd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f02627c7bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5582d8251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5582d821e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f02626d7c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f02626d7d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5582d821aa3a]

Exiting...
21:22:47 (8334): wrapper (7.17.26016): starting
21:22:47 (8334): wrapper (7.17.26016): starting
21:22:47 (8334): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f6bd03ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f2bbcf66ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f2bbcfcdd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f6bd05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f6bd07b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f2bbcf66ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f2bbd008f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f2bbd014d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f2bbd03fbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f6bd051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f6bd01e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f2bbcf4fc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f2bbcf4fd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f6bd01aa3a]

Exiting...
07:58:20 (8314): wrapper (7.17.26016): starting
07:58:20 (8314): wrapper (7.17.26016): starting
07:58:20 (8314): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:54:32 (6473): wrapper (7.17.26016): starting
16:54:32 (6473): wrapper (7.17.26016): starting
16:54:32 (6473): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c81da3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f316b98dae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f316b9f4d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c81da5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c81da7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f316b98dae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f316ba2ff43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f316ba3bd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f316ba66bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55c81da51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c81da1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f316b976c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f316b976d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c81da1aa3a]

Exiting...
08:58:35 (6490): wrapper (7.17.26016): starting
08:58:35 (6490): wrapper (7.17.26016): starting
08:58:35 (6490): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:55:09 (6490): cmdock exited; CPU time 6828.688404
10:55:09 (6490): called boinc_finish(0)

</stderr_txt>
]]>

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