Task 81986773

Name corona_RdRp_v2_sidock_01735424_r1_s-20_0
Workunit 53407902
Created 5 Jun 2024, 22:30:29 UTC
Sent 12 Jun 2024, 3:40:51 UTC
Report deadline 18 Jun 2024, 3:40:51 UTC
Received 13 Jun 2024, 17:05:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 9 hours 52 min 35 sec
CPU time 1 days 9 hours 49 min 53 sec
Validate state Valid
Credit 1,433.08
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.16 MB
Peak swap size 200.72 MB
Peak disk usage 20.57 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
08:46:20 (27302): wrapper (7.17.26016): starting
08:46:20 (27302): wrapper (7.17.26016): starting
08:46:20 (27302): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5607ce24bf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f9f596723c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f9f594af03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f9f5948e859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f9f594f929e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f9f5950132c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f9f59502b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5607ce2683dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5607ce2878e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f9f594af0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f9f5954926f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f9f5954eef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f9f5958188f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5607ce25dadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5607ce22a784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f9f594900b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5607ce226a3a]

Exiting...
10:32:26 (2501): wrapper (7.17.26016): starting
10:32:26 (2501): wrapper (7.17.26016): starting
10:32:26 (2501): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:05:37 (2501): cmdock exited; CPU time 120610.053530
20:05:37 (2501): called boinc_finish(0)

</stderr_txt>
]]>


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