Task 81984852

Name corona_RdRp_v2_sidock_01734475_r1_s-20_0
Workunit 53406004
Created 5 Jun 2024, 22:28:35 UTC
Sent 11 Jun 2024, 17:46:24 UTC
Report deadline 17 Jun 2024, 17:46:24 UTC
Received 14 Jun 2024, 4:28:32 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 2 days 6 hours 44 min 20 sec
CPU time 2 days 6 hours 39 min 57 sec
Validate state Valid
Credit 2,316.51
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.55 MB
Peak swap size 200.13 MB
Peak disk usage 21.02 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
23:20:32 (9277): wrapper (7.17.26016): starting
23:20:32 (9277): wrapper (7.17.26016): starting
23:20:32 (9277): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d516eadf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f855091f3c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f855075c03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f855073b859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f85507a629e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f85507ae32c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f85507afb5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d516eca3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d516ee98e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f855075c0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f85507f626f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f85507fbef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f855082e88f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d516ebfadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d516e8c784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f855073d0b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d516e88a3a]

Exiting...
10:32:26 (2499): wrapper (7.17.26016): starting
10:32:26 (2499): wrapper (7.17.26016): starting
10:32:26 (2499): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:28:19 (2499): cmdock exited; CPU time 161509.412244
07:28:19 (2499): called boinc_finish(0)

</stderr_txt>
]]>


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