Task 81982741

Name corona_RdRp_v2_sidock_01733411_r2_s-20_0
Workunit 53403877
Created 5 Jun 2024, 22:26:34 UTC
Sent 11 Jun 2024, 7:16:24 UTC
Report deadline 17 Jun 2024, 7:16:24 UTC
Received 13 Jun 2024, 0:04:29 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 13 hours 26 min 30 sec
CPU time 1 days 13 hours 23 min 38 sec
Validate state Valid
Credit 1,594.94
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.35 MB
Peak swap size 201.03 MB
Peak disk usage 20.65 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
12:22:12 (21071): wrapper (7.17.26016): starting
12:22:12 (21071): wrapper (7.17.26016): starting
12:22:12 (21071): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5624643cef8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f0ca79b53c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f0ca77f203b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f0ca77d1859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f0ca783c29e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f0ca784432c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f0ca7845b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5624643eb3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56246440a8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f0ca77f20c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f0ca788c26f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f0ca7891ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f0ca78c488f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5624643e0adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5624643ad784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f0ca77d30b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5624643a9a3a]

Exiting...
10:32:26 (2497): wrapper (7.17.26016): starting
10:32:26 (2497): wrapper (7.17.26016): starting
10:32:26 (2497): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:04:18 (2497): cmdock exited; CPU time 59426.254368
03:04:18 (2497): called boinc_finish(0)

</stderr_txt>
]]>


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