Task 81982500

Name corona_RdRp_v2_sidock_01733287_r1_s-20_0
Workunit 53403628
Created 5 Jun 2024, 22:26:16 UTC
Sent 11 Jun 2024, 6:22:32 UTC
Report deadline 17 Jun 2024, 6:22:32 UTC
Received 12 Jun 2024, 23:28:45 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 13 hours 53 min 30 sec
CPU time 1 days 13 hours 50 min 28 sec
Validate state Valid
Credit 1,593.57
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.66 MB
Peak swap size 200.31 MB
Peak disk usage 20.63 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
11:18:49 (18436): wrapper (7.17.26016): starting
11:18:49 (18436): wrapper (7.17.26016): starting
11:18:49 (18436): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5606627f9f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f5616b3b3c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f561697803b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f5616957859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f56169c229e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f56169ca32c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f56169cbb5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5606628163dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5606628358e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f56169780c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f5616a1226f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f5616a17ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f5616a4a88f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56066280badf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5606627d8784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f56169590b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5606627d4a3a]

Exiting...
10:32:26 (2496): wrapper (7.17.26016): starting
10:32:26 (2496): wrapper (7.17.26016): starting
10:32:26 (2496): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:28:35 (2496): cmdock exited; CPU time 57279.538946
02:28:35 (2496): called boinc_finish(0)

</stderr_txt>
]]>


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