Task 81980942

Name corona_RdRp_v2_sidock_01732512_r1_s-20_0
Workunit 53402078
Created 5 Jun 2024, 22:24:48 UTC
Sent 10 Jun 2024, 22:29:00 UTC
Report deadline 16 Jun 2024, 22:29:00 UTC
Received 12 Jun 2024, 9:25:43 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 9 hours 39 min 50 sec
CPU time 1 days 9 hours 37 min 29 sec
Validate state Valid
Credit 1,429.07
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.92 MB
Peak swap size 200.57 MB
Peak disk usage 20.49 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
01:29:04 (3932): wrapper (7.17.26016): starting
01:29:04 (3932): wrapper (7.17.26016): starting
01:29:04 (3932): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55627e5e1f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fb13dd823c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fb13dbbf03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fb13db9e859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7fb13dc0929e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7fb13dc1132c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7fb13dc12b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55627e5fe3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55627e61d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fb13dbbf0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fb13dc5926f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fb13dc5eef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fb13dc9188f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55627e5f3adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55627e5c0784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fb13dba00b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55627e5bca3a]

Exiting...
10:32:26 (2493): wrapper (7.17.26016): starting
10:32:26 (2493): wrapper (7.17.26016): starting
10:32:26 (2493): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:25:32 (2493): cmdock exited; CPU time 6781.614463
12:25:32 (2493): called boinc_finish(0)

</stderr_txt>
]]>


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