Task 81979095

Name corona_RdRp_v2_sidock_01731595_r1_s-20_0
Workunit 53400244
Created 5 Jun 2024, 22:22:59 UTC
Sent 10 Jun 2024, 13:11:59 UTC
Report deadline 16 Jun 2024, 13:11:59 UTC
Received 17 Jun 2024, 3:34:29 UTC
Server state Over
Outcome Computation error
Client state Aborted by user
Exit status 203 (0x000000CB) EXIT_ABORTED_VIA_GUI
Computer ID 58171
Run time 23 hours 56 min 37 sec
CPU time 23 hours 47 min 7 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 8.24 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.87 MB
Peak swap size 201.05 MB
Peak disk usage 20.50 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
aborted by user</message>
<stderr_txt>
22:12:22 (25808): wrapper (7.17.26016): starting
22:12:22 (25808): wrapper (7.17.26016): starting
22:12:22 (25808): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f00e5a3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7ac54691eae0]
/usr/lib/libc.so.6(+0x94e44)[0x7ac546976e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7ac54691ea30]
/usr/lib/libc.so.6(abort+0xdf)[0x7ac5469064c3]
/usr/lib/libc.so.6(+0x25354)[0x7ac546907354]
/usr/lib/libc.so.6(+0x9f085)[0x7ac546981085]
/usr/lib/libc.so.6(+0xa149c)[0x7ac54698349c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7ac546985dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f00e5a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f00e5a7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7ac54691eae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7ac5469c0f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7ac5469ccd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7ac5469f7bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f00e5a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f00e5a1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7ac546907c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7ac546907d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f00e5a1aa3a]

Exiting...
09:49:46 (8815): wrapper (7.17.26016): starting
09:49:46 (8815): wrapper (7.17.26016): starting
09:49:46 (8815): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
15:30:49 (15373): wrapper (7.17.26016): starting
15:30:50 (15373): wrapper (7.17.26016): starting
15:30:50 (15373): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:13:07 (8250): wrapper (7.17.26016): starting
16:13:07 (8250): wrapper (7.17.26016): starting
16:13:07 (8250): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:40:49 (12263): wrapper (7.17.26016): starting
18:40:49 (12263): wrapper (7.17.26016): starting
18:40:49 (12263): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ee4223ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f767e25dae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f767e2b5e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f767e25da30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f767e2454c3]
/usr/lib/libc.so.6(+0x25354)[0x7f767e246354]
/usr/lib/libc.so.6(+0x9f085)[0x7f767e2c0085]
/usr/lib/libc.so.6(+0xa149c)[0x7f767e2c249c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f767e2c4dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ee4225c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ee4227b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f767e25dae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f767e2fff43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f767e30bd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f767e336bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ee42251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ee4221e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f767e246c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f767e246d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ee4221aa3a]

Exiting...
11:17:31 (9905): wrapper (7.17.26016): starting
11:17:31 (9905): wrapper (7.17.26016): starting
11:17:31 (9905): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:57:19 (8770): wrapper (7.17.26016): starting
11:57:19 (8770): wrapper (7.17.26016): starting
11:57:19 (8770): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x564c3523ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f6b044f7ae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f6b0454fe44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f6b044f7a30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f6b044df4c3]
/usr/lib/libc.so.6(+0x25354)[0x7f6b044e0354]
/usr/lib/libc.so.6(+0x9f085)[0x7f6b0455a085]
/usr/lib/libc.so.6(+0xa149c)[0x7f6b0455c49c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f6b0455edae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x564c3525c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x564c3527b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f6b044f7ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f6b04599f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f6b045a5d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f6b045d0bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x564c35251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x564c3521e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f6b044e0c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f6b044e0d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x564c3521aa3a]

Exiting...
17:08:39 (8193): wrapper (7.17.26016): starting
17:08:39 (8193): wrapper (7.17.26016): starting
17:08:39 (8193): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b3eec3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f6cb1c9aae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f6cb1d01d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b3eec5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b3eec7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f6cb1c9aae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f6cb1d3cf43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f6cb1d48d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f6cb1d73bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b3eec51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b3eec1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f6cb1c83c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f6cb1c83d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b3eec1aa3a]

Exiting...
10:11:39 (7431): wrapper (7.17.26016): starting
10:11:39 (7431): wrapper (7.17.26016): starting
10:11:39 (7431): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5566d883ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fe462f3bae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fe462fa2d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5566d885c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5566d887b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fe462f3bae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fe462fddf43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fe462fe9d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fe463014bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5566d8851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5566d881e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fe462f24c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fe462f24d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5566d881aa3a]

Exiting...
13:31:44 (13917): wrapper (7.17.26016): starting
13:31:45 (13917): wrapper (7.17.26016): starting
13:31:45 (13917): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e23a63ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f32fbf30ae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f32fbf88e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f32fbf30a30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f32fbf184c3]
/usr/lib/libc.so.6(+0x25354)[0x7f32fbf19354]
/usr/lib/libc.so.6(+0x9f085)[0x7f32fbf93085]
/usr/lib/libc.so.6(+0xa149c)[0x7f32fbf9549c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f32fbf97dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e23a65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e23a67b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f32fbf30ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f32fbfd2f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f32fbfded77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f32fc009bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e23a651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e23a61e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f32fbf19c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f32fbf19d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e23a61aa3a]

Exiting...
11:22:01 (87349): wrapper (7.17.26016): starting
11:22:01 (87349): wrapper (7.17.26016): starting
11:22:01 (87349): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55750003ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fcc986c7ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7fcc9872ed55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55750005c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55750007b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fcc986c7ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fcc98769f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fcc98775d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fcc987a0bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557500051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55750001e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fcc986b0c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fcc986b0d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55750001aa3a]

Exiting...
13:29:22 (7326): wrapper (7.17.26016): starting
13:29:22 (7326): wrapper (7.17.26016): starting
13:29:22 (7326): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ef1623ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f9e14094ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f9e140fbd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ef1625c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ef1627b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f9e14094ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f9e14136f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f9e14142d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f9e1416dbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ef16251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ef1621e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f9e1407dc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f9e1407dd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ef1621aa3a]

Exiting...
18:22:42 (8243): wrapper (7.17.26016): starting
18:22:42 (8243): wrapper (7.17.26016): starting
18:22:42 (8243): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560b4283ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f8714cbdae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f8714d24d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560b4285c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560b4287b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f8714cbdae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f8714d5ff43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f8714d6bd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f8714d96bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560b42851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560b4281e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f8714ca6c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f8714ca6d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560b4281aa3a]

Exiting...
10:38:35 (15917): wrapper (7.17.26016): starting
10:38:35 (15917): wrapper (7.17.26016): starting
10:38:35 (15917): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e20923ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fa3587a3ae0]
/usr/lib/libc.so.6(+0x94e44)[0x7fa3587fbe44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7fa3587a3a30]
/usr/lib/libc.so.6(abort+0xdf)[0x7fa35878b4c3]
/usr/lib/libc.so.6(+0x25354)[0x7fa35878c354]
/usr/lib/libc.so.6(+0x9f085)[0x7fa358806085]
/usr/lib/libc.so.6(+0xa149c)[0x7fa35880849c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7fa35880adae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e20925c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e20927b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fa3587a3ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fa358845f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fa358851d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fa35887cbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e209251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e20921e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fa35878cc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fa35878cd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e20921aa3a]

Exiting...
22:58:24 (1899910): wrapper (7.17.26016): starting
22:58:24 (1899910): wrapper (7.17.26016): starting
22:58:24 (1899910): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5582ade3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f9dcbb48ae0]
/usr/lib/libc.so.6(+0x94e44)[0x7f9dcbba0e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7f9dcbb48a30]
/usr/lib/libc.so.6(abort+0xdf)[0x7f9dcbb304c3]
/usr/lib/libc.so.6(+0x25354)[0x7f9dcbb31354]
/usr/lib/libc.so.6(+0x9f085)[0x7f9dcbbab085]
/usr/lib/libc.so.6(+0xa149c)[0x7f9dcbbad49c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7f9dcbbafdae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5582ade5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5582ade7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f9dcbb48ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f9dcbbeaf43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f9dcbbf6d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f9dcbc21bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5582ade51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5582ade1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f9dcbb31c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f9dcbb31d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5582ade1aa3a]

Exiting...
10:45:16 (41040): wrapper (7.17.26016): starting
10:45:16 (41040): wrapper (7.17.26016): starting
10:45:16 (41040): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56420f03ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7fedabebbae0]
/usr/lib/libc.so.6(+0x94e44)[0x7fedabf13e44]
/usr/lib/libc.so.6(gsignal+0x20)[0x7fedabebba30]
/usr/lib/libc.so.6(abort+0xdf)[0x7fedabea34c3]
/usr/lib/libc.so.6(+0x25354)[0x7fedabea4354]
/usr/lib/libc.so.6(+0x9f085)[0x7fedabf1e085]
/usr/lib/libc.so.6(+0xa149c)[0x7fedabf2049c]
/usr/lib/libc.so.6(__libc_free+0x7e)[0x7fedabf22dae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56420f05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56420f07b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7fedabebbae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7fedabf5df43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7fedabf69d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7fedabf94bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56420f051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56420f01e784]
/usr/lib/libc.so.6(+0x25c88)[0x7fedabea4c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7fedabea4d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56420f01aa3a]

Exiting...
18:31:07 (7187): wrapper (7.17.26016): starting
18:31:08 (7187): wrapper (7.17.26016): starting
18:31:08 (7187): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:45:15 (872018): wrapper (7.17.26016): starting
11:45:15 (872018): wrapper (7.17.26016): starting
11:45:15 (872018): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)

</stderr_txt>
]]>


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