Task 81977560

Name corona_RdRp_v2_sidock_01730835_r1_s-20_0
Workunit 53398724
Created 5 Jun 2024, 22:21:24 UTC
Sent 10 Jun 2024, 5:57:48 UTC
Report deadline 16 Jun 2024, 5:57:48 UTC
Received 11 Jun 2024, 22:01:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 13 hours 55 min 19 sec
CPU time 1 days 13 hours 55 min 19 sec
Validate state Valid
Credit 1,612.83
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.83 MB
Peak swap size 200.51 MB
Peak disk usage 20.54 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
10:28:39 (2073): wrapper (7.17.26016): starting
10:28:39 (2073): wrapper (7.17.26016): starting
10:28:39 (2073): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55990179cf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fa941b093c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fa94194603b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fa941925859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7fa94199029e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7fa94199832c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7fa941999b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5599017b93dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5599017d88e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fa9419460c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fa9419e026f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fa9419e5ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fa941a1888f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5599017aeadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55990177b784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fa9419270b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x559901777a3a]

Exiting...
01:28:32 (3829): wrapper (7.17.26016): starting
01:28:33 (3829): wrapper (7.17.26016): starting
01:28:33 (3829): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:01:36 (3829): cmdock exited; CPU time 84663.921955
01:01:36 (3829): called boinc_finish(0)

</stderr_txt>
]]>


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