Task 81966341

Name	corona_RdRp_v2_sidock_01725221_r1_s-20_0
Workunit	53387496
Created	5 Jun 2024, 22:10:19 UTC
Sent	8 Jun 2024, 1:17:46 UTC
Report deadline	14 Jun 2024, 1:17:46 UTC
Received	11 Jun 2024, 11:58:28 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	4
Run time	2 days 5 hours 53 min 43 sec
CPU time	2 days 5 hours 53 min 43 sec
Validate state	Valid
Credit	2,337.23
Device peak FLOPS	6.67 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.82 MB
Peak swap size	200.49 MB
Peak disk usage	21.00 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
06:35:46 (8295): wrapper (7.17.26016): starting
06:35:46 (8295): wrapper (7.17.26016): starting
06:35:46 (8295): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:04:04 (3519): wrapper (7.17.26016): starting
10:04:04 (3519): wrapper (7.17.26016): starting
10:04:04 (3519): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a83e582f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fa3476963c0]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7fa34752a720]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a83e59f3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a83e5be8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fa3474d30c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fa34756d26f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fa347572ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fa3475a588f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a83e594adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a83e561784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fa3474b40b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a83e55da3a]

Exiting...
08:17:19 (24718): wrapper (7.17.26016): starting
08:17:19 (24718): wrapper (7.17.26016): starting
08:17:19 (24718): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d4f34dbf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f6c3def73c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f6c3dd3403b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f6c3dd13859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f6c3dd7e29e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f6c3dd8632c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f6c3dd87b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d4f34f83dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d4f35178e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f6c3dd340c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f6c3ddce26f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f6c3ddd3ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f6c3de0688f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d4f34edadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d4f34ba784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f6c3dd150b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d4f34b6a3a]

Exiting...
01:28:32 (3821): wrapper (7.17.26016): starting
01:28:33 (3821): wrapper (7.17.26016): starting
01:28:33 (3821): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:58:20 (3821): cmdock exited; CPU time 48520.886296
14:58:20 (3821): called boinc_finish(0)

</stderr_txt>
]]>