Task 100052806

Name ebola_RdRp_v1_sidock_00735256_r3_s-24.0_0
Workunit 70483039
Created 14 Mar 2026, 14:12:33 UTC
Sent 16 Mar 2026, 18:24:33 UTC
Report deadline 20 Mar 2026, 18:24:33 UTC
Received 18 Mar 2026, 3:27:34 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 54585
Run time 10 hours 11 min 35 sec
CPU time 10 hours 11 min 24 sec
Validate state Valid
Credit 574.28
Device peak FLOPS 8.50 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.63 MB
Peak swap size 246.84 MB
Peak disk usage 20.50 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
13:56:46 (421491): wrapper (7.17.26016): starting
13:56:46 (421491): wrapper (7.17.26016): starting
13:56:46 (421491): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (22 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x631a29a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76356b845330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x76356b89eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x76356b84527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x76356b8288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x76356b8297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x76356b8a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x76356b8ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x76356b8addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x631a29a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x631a29a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76356b845330]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x631a29a3aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76356b845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x76356b8ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x76356b8f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x76356b92975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x631a29a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x631a29a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x76356b82a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x76356b82a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x631a29a1aa3a]

Exiting...
21:44:53 (481696): wrapper (7.17.26016): starting
21:44:53 (481696): wrapper (7.17.26016): starting
21:44:53 (481696): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x614de123ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x776592845330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x77659289eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x77659284527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7765928288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7765928297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7765928a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7765928ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7765928addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x614de125c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x614de127b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x776592845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7765928ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7765928f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x77659292975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x614de1251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x614de121e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x77659282a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x77659282a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x614de121aa3a]

Exiting...
09:45:02 (576833): wrapper (7.17.26016): starting
09:45:02 (576833): wrapper (7.17.26016): starting
09:45:02 (576833): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x592a7ce3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x70e655045330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x70e65509eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x70e65504527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x70e6550288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x70e6550297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x70e6550a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x70e6550ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x70e6550addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x592a7ce5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x592a7ce7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x70e655045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70e6550ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70e6550f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70e65512975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x592a7ce51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x592a7ce1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70e65502a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70e65502a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x592a7ce1aa3a]

Exiting...
21:00:02 (663347): wrapper (7.17.26016): starting
21:00:02 (663347): wrapper (7.17.26016): starting
21:00:02 (663347): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:27:19 (663347): cmdock exited; CPU time 5235.890158
22:27:19 (663347): called boinc_finish(0)

</stderr_txt>
]]>


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