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Send message Joined: 31 Oct 20 Posts: 32 Credit: 847,529 RAC: 51 |
Hey hoarfrost! Thanks for getting back to me. I looked up the corresponding process ID via activity manager of one of the rbdock processes currently running. I typed in ~ user$ top -b -n 1 -p 94626 (user is just anonymised here) and the output was the following. _____________ invalid option or syntax: -b top usage: top [-a | -d | -e | -c <mode>] [-F | -f] [-h] [-i <interval>] [-l <samples>] [-ncols <columns>] [-o <key>] [-O <secondaryKey>] keys: pid (default), command, cpu, cpu_me, cpu_others, csw, time, threads, ports, mregion, mem, rprvt, purg, vsize, vprvt, kprvt, kshrd, pgrp, ppid, state, uid, wq, faults, cow, user, msgsent, msgrecv, sysbsd, sysmach, pageins, boosts, instrs, cycles [-R | -r] [-S] [-s <delay>] [-n <nprocs>] [-stats <key(s)>] [-pid <processid>] [-user <username>] [-U <username>] [-u] Am I typing in the command correctly by just inserting the process ID number into the placeholder as shown above? It seems that the command is not accepting the options that are chosen here. Any ideas of what I might be doing wrong or could try instead? Thanks! |
Send message Joined: 11 Oct 20 Posts: 339 Credit: 25,715,507 RAC: 5,320 |
Try, please without "-b": top -n 1 -p |
Send message Joined: 31 Oct 20 Posts: 32 Credit: 847,529 RAC: 51 |
Unfortunately the MacOS terminal (zsh shell) still outputs yet another invalid error --> invalid option or syntax: -p Seeing the pid-option from the prior output, I tried top -n 1 -pid <PID of a rbdock process> and it gave back the following. Output Processes: 473 total, 7 running, 466 sleeping, 1694 threads Load Avg: 17.89, 14.48, 11.54 CPU usage: 84.95% user, 9.49% sys, 5.55% idle SharedLibs: 220M resident, 60M data, 17M linkedit. MemRegions: 149916 total, 2284M resident, 103M private, 792M shared. PhysMem: 8099M used (1887M wired), 92M unused. VM: 7533G vsize, 1993M framework vsize, 1271228(0) swapins, 1820351(0) swapouts. Networks: packets: 8996911/7031M in, 8644059/6201M out. Disks: 55222355/249G read, 5023410/56G written. PID 94001 COMMAND rbdock %CPU TIME 75.00% #TH 1/1 #WQ 0 #POR 14 MEM 72M PURG 0B CMPRS 4148K PGRP 1173 PPID 93987 STATE running BOOSTS *0[1] %CPU_ME 0.00000 %CPU_OTHRS 0.00000 UID 503 FAULTS 43774 COW 91 MSGS 54 MSGR 14 SYSBSD 35418 SYSM 138 CSW 943651+ PAGE 0 IDLE 0 POWE 62.0 Edit On Mac it seems that the top command does not support/have batch mode as the -b option does not exist. |
Send message Joined: 24 Oct 20 Posts: 24 Credit: 1,084,026 RAC: 0 |
Hello I just realize you have a Mac app : great !! I was only crunching on linux so i just attached sidock to my brand new iMac : <core_client_version>7.16.12</core_client_version> See here. They all fail for the same reason. The Mac app is not a "stand-alone" boinc application ? I need to install more stuff locally ? Thanks. |
Send message Joined: 28 Oct 20 Posts: 14 Credit: 4,698 RAC: 0 |
The cmdock and sidock applications have several application contents, which are complete bundled by the project and downloaded by the BOINC client. The cmdock application has an error, which must be fixed by the project. - But, the sidock application work without any problem. You can also select the application you would like to crunch with the application preferences. |
Send message Joined: 9 Oct 20 Posts: 185 Credit: 2,782,517 RAC: 20 |
Errors fixed, version cmdock-boinc 1.2 for Mac should work! |
Send message Joined: 28 Oct 20 Posts: 14 Credit: 4,698 RAC: 0 |
Thank you! The new app is working. |
Send message Joined: 24 Oct 20 Posts: 24 Credit: 1,084,026 RAC: 0 |
Yep they didn't crash from the start, they are running now, thanks ! |
Send message Joined: 24 Oct 20 Posts: 24 Credit: 1,084,026 RAC: 0 |
I found a new issue on macOS : the tasks do not suspend. If I tell boinc to suspend processing globally, boinc "thinks" all is suspended but the tasks actually continue to run ! |
Send message Joined: 23 Oct 20 Posts: 12 Credit: 3,557,820 RAC: 9,083 |
Hello. Thanks for your work! I'm successfully running SiDock@home on a MacBook Pro running El Capitan. I also tried SiDock@home on a MacBook running Lion. Unfortunately the tasks error out on the latter. <core_client_version>7.6.34</core_client_version> <![CDATA[ <message> process exited with code 195 (0xc3, -61) </message> <stderr_txt> 09:16:53 (289): wrapper (7.5.26013): starting 09:16:53 (289): wrapper: running worker () worker: line 14: 292 Segmentation fault: 11 DYLD_FALLBACK_LIBRARY_PATH="$CMDOCK_ROOT/build" "$CMDOCK_ROOT/build/cmdock" -r target.prm -p "$CMDOCK_ROOT/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out > docking_log 09:16:54 (289): worker exited; CPU time 0.010226 09:16:54 (289): app exit status: 0x8b00 09:16:54 (289): called boinc_finish(195) </stderr_txt> ]]> Might this be an issue with using Lion? - - - - - - - - - - Greetings, Jens |
Send message Joined: 9 Oct 20 Posts: 185 Credit: 2,782,517 RAC: 20 |
I found a new issue on macOS : the tasks do not suspend. I will try to fix that, it is an old bug :) |
Send message Joined: 9 Oct 20 Posts: 185 Credit: 2,782,517 RAC: 20 |
Hello. We should look at it. |
Send message Joined: 9 Oct 20 Posts: 185 Credit: 2,782,517 RAC: 20 |
Please check a new version of RxDock 1.0. At least on my computer it handles CPU throttling and suspending tasks via BOINCManager. It is interesting if it works on MacOS Lion. I plan to do the same job with CMDock (without success so far). |
Send message Joined: 23 Oct 20 Posts: 12 Credit: 3,557,820 RAC: 9,083 |
Thanks again for your work! Unfortunately I'll not be able to test on Lion during the next days while staying away from home. My MacBook is only used for testing (and important challenges), so I can't control it via BAM! for now. Will try RxDock with my MacBook Pro as soon as it finishes old work. - - - - - - - - - - Greetings, Jens |
Send message Joined: 23 Oct 20 Posts: 12 Credit: 3,557,820 RAC: 9,083 |
Will try RxDock with my MacBook Pro as soon as it finishes old work. RxDock is running on El Capitan. Thanks again! - - - - - - - - - - Greetings, Jens |
Send message Joined: 24 Oct 20 Posts: 24 Credit: 1,084,026 RAC: 0 |
I found a new issue on macOS : the tasks do not suspend. Thanks ! Note that this only happens with Curie tasks, the RxDock do suspend properly. |
Send message Joined: 23 Oct 20 Posts: 12 Credit: 3,557,820 RAC: 9,083 |
No luck with Lion: https://www.sidock.si/sidock/results.php?hostid=1095 - - - - - - - - - - Greetings, Jens |
Send message Joined: 31 Jan 21 Posts: 4 Credit: 4,828,418 RAC: 9,520 |
OK. Now the only available app for RXDoc is for Mac. The only WUs that are available ware RXDOCK. Is there a chance that anything else than a mac contribut on RXdock? |
Send message Joined: 11 Nov 20 Posts: 47 Credit: 83,493 RAC: 0 |
Dear MAC users, currently we have not official apple developer account, thus we can not issue mac version. If some one has idea to help us to solve this issue please contact jukic dot marko at gmail dot com ;-) |
Send message Joined: 6 Feb 21 Posts: 8 Credit: 377,447 RAC: 597 |
@Gemini8/Jens is there a chance your Lion is 32 bit instead of 64 bit? The SiDock app appears to need 64 bit. |
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