Message boards :
Number crunching :
No checkpoints?
Message board moderation
Author | Message |
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Send message Joined: 30 Oct 20 Posts: 1 Credit: 510,077 RAC: 0 |
As Windows 10 occasionally forces its updates on us, I have noticed that all the partially crunched units finished with an error immediatelly after the computer restart. |
Send message Joined: 3 Nov 20 Posts: 41 Credit: 1,829,319 RAC: 260 |
The RNA world project has found a way to add checkpoints using virtual machines even without understanding the application program well enough to add them there. |
Send message Joined: 13 Jan 21 Posts: 76 Credit: 38,846,214 RAC: 0 |
There's are an echo in here :-) |
Send message Joined: 13 Jan 21 Posts: 76 Credit: 38,846,214 RAC: 0 |
These new RdRp WUs are running up to 2.5 hours. You really need to implement checkpointing. |
Send message Joined: 25 Oct 20 Posts: 17 Credit: 226,278 RAC: 0 |
These new RdRp WUs are running up to 2.5 hours. ?? Less than 1 hour on my old notebook.. |
Send message Joined: 13 Jan 21 Posts: 76 Credit: 38,846,214 RAC: 0 |
Some are running 3.5 hours. Checkpointing is a must. |
Send message Joined: 13 Jan 21 Posts: 76 Credit: 38,846,214 RAC: 0 |
Had some WUs that ran up to 5 hours last night. Without the ability to Suspend at Checkpoint the WUs have to be allowed to run out or abort them. This is a real nuisance if one needs to turn off a computer for any reason. |
Send message Joined: 13 Jan 21 Posts: 76 Credit: 38,846,214 RAC: 0 |
Had some WUs that ran up to 5 hours last night. Without the ability to Suspend at Checkpoint the WUs have to be allowed to run out or abort them. This is a real nuisance if one needs to turn off a computer for any reason |
Send message Joined: 13 Jan 21 Posts: 76 Credit: 38,846,214 RAC: 0 |
Had some WUs that ran up to 5 hours last night. Without the ability to Suspend at Checkpoint the WUs have to be allowed to run out or abort them. This is a real nuisance if one needs to turn off a computer for any reason. |
Send message Joined: 18 Mar 21 Posts: 3 Credit: 553,345 RAC: 0 |
Yes, another craphole of a wriiten project with no checkpoints. Way to give a crap about crunchers wasting time and electricity. Bravo! |
Send message Joined: 11 Oct 20 Posts: 338 Credit: 25,686,198 RAC: 9,023 |
Hello bluestang! :) Sometimes I have a problem with electric power, but now, at my home computer: ~$ uptime 02:14:43 up 23 days, 12:09, 1 user, load average: 32,47, 30,09, 29,79 Of course, for many computers our application is uncomfortable, and we understand it. But at this stage of project life we cannot provide tasks event for 1% of BOINC Grid. Of course we think how to change it. |
Send message Joined: 25 Oct 20 Posts: 3 Credit: 391,459 RAC: 0 |
Yes, another craphole of a wriiten project with no checkpoints. Since it is open source you can implement checkpoints if it's so easy ;) |
Send message Joined: 9 Feb 21 Posts: 7 Credit: 7,473,030 RAC: 2,438 |
I also find it a bit unfortunate, that no checkpoints are implemented. My private workmachine is between 5-7 hours online and I don't want to hibernate the machine all days. the half-hour WUs were no problem, but with the new WUs I have workhours from 3-4 hours. Sadly I have to switch |
Send message Joined: 18 Mar 21 Posts: 3 Credit: 553,345 RAC: 0 |
Yes, another craphole of a wriiten project with no checkpoints. Don't make excuses for the lack of preparation in creating a project. These new work units are running for 6+ hours now...there is absolutely no reason that any project should not have checkpoints! |
Send message Joined: 26 Oct 20 Posts: 53 Credit: 2,520,836 RAC: 0 |
hoarfrost wrote: Of course, for many computers our application is uncomfortable, and we understand it. But at this stage of project life we cannot provide tasks event for 1% of BOINC Grid. Of course we think how to change it.Hoarfrost, initially your tasks are 2000 compounds and for BOINC you divided that into 4 times 500 creating workunits *_1_, *_2_, *_3_ and *_4_. For your fifth target with the E protein, you could consider to create from that 2000 compounds tasks with 'only' 100 or 200 compounds to reduce the run time duration as long as you don't have a solution for the (no) checkpoints issue. |
Send message Joined: 23 Nov 20 Posts: 28 Credit: 771,948 RAC: 0 |
If i remember correctly each wu composed by 500 compound is 2MB I don't knof if a 100 compound wu will be much smaller (es: 0.2MB). If not, there may be a disk space problem |
Send message Joined: 30 Dec 20 Posts: 7 Credit: 7,850,014 RAC: 0 |
with such long tasks and no checkpoints, many computers that work 5-7 hour a day just warm an air. |
Send message Joined: 11 Nov 20 Posts: 47 Credit: 83,493 RAC: 0 |
Dear Crunchers, it seems that the E protein is a very specific target, and HTVS (High Throughput Virtual Screening) for some WU do not find a pose of the ligand within the receptor. We can think of our experiment as sieving, where the composition of the fractions depends on the choice of sieve. Perhaps our standard sieve has oversized pores and sometimes the fraction on the sieve contains no particles. We still hope to find between one billion molecules, some potential inhibitors of protein E. Crtomir |
Send message Joined: 7 Apr 21 Posts: 6 Credit: 459,668 RAC: 0 |
Maybe the work units could be made smaller so that we don't have to "waste" a lot of work in case we have to turn off or restart our machines? |
Send message Joined: 20 Mar 21 Posts: 2 Credit: 13,470,571 RAC: 61,504 |
Please try and add checkpoints. I know that the tasks were made much longer recently for a Sprint, but check points would help both the project and those that are donating computer time, hardware and electricity not to feel like they are wasting resources for when the puters can't complete a task for several different reasons. I appreciate the subject of this project and would like to continue to contribute, but until either the tasks go back to a short-er run time or there are checkpoints, I am out. Thank you for all that you continue to due, if I choose to participate or not! |
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